Create and save an Xcalibur sample sequence If you want to manually process spectra, refer to the section on processing spectra from the clipboard. Automated processing via ProMass also requires that there be at least one LC/MS chromatographic peak in the data file. Therefore, if you want to process infusion data, you will need to manually process your spectra from the Build ZNova Params screen.
The steps for running ProMass in a fully automated mode are:
Create and save an Xcalibur sample sequence
Create a Qual Processing method for picking qualitative
chromatographic peaks
Check your processing method for the proper format
Add ZNova Parameters to your Xcalibur
Sequence